•   SELECTED PUBLICATIONS
Purification and characterization of a salt, solvent, detergent and bleach tolerant protease from a new gamma-Proteobacterium isolated from the marine environment of the Sundarbans: Barindra Sana, Debashish Ghosh, Malay Saha and Joydeep Mukherjee: Process Biochemistry 41, 208-215, 2006
•   Distribution of actinomycetes, their antagonistic behaviour and the physico-chemical characteristics of the world’s largest tidal mangrove forest: Mitra A, Santra SC, Mukherjee J: Applied Microbiology and Biotechnology, 80, 685-695, 2008
•   Streptomyces sundarbansensis sp. nov., a novel actinomycete that produces 2-allyloxyphenol: Meyyappan Arumugam, Anindita Mitra, Arnab Pramanik, Malay Saha, Ratan Gachhui and Joydeep Mukherjee: International Journal of Systematic and Evolutionary Microbiology, 61, 11, 2664-9, 2011
•   The pathogen of the Great Barrier Reef sponge Rhopaloeides odorabile is a new strain of Pseudoalteromonas agarivorans containing abundant and diverse virulence-related genes: Jayanta D. Choudhury, Arnab Pramanik, Nicole S. Webster, Lyndon E. Llewellyn, Ratan Gachhui, Joydeep Mukherjee: Marine Biotechnology, 17 (4), 463-478, 2015
•   Streptomyces euryhalinus sp. nov., a new actinomycete isolated from a mangrove forest: Kaushik Biswas, Jayanta Debabrata Choudhury, Riddhi Mahansaria, Malay Saha, Joydeep Mukherjee: Journal of Antibiotics (Nature Publishing Group), 70, 747-753, 2017
•   U32 collagenase from Pseudoalteromonas agarivorans NW4327: Activity, structure, substrate interactions and molecular dynamics simulations: Sayak Bhattacharya, Sourya Bhattacharya, Ratan Gachhui, Saugata Hazra, Joydeep Mukherjee: International Journal of Biological Macromolecules: 124, 635–650, 2019
•   Aerofilum fasciculatum gen. nov., sp. nov. (Oculatellaceae) and Euryhalinema pallustris sp. nov. (Prochlorotrichaceae) isolated from an Indian mangrove forest: Sandeep Chakraborty, Veerabadhran Maruthanayagam, Anushree Achari, Arnab Pramanik, Parasuraman Jaisankar, Joydeep Mukherjee: Phytotaxa, 522, 2021
•   Almyronema epifaneia gen. & sp. nov. (Cyanobacteria, Nodosilineaceae) isolated from an Indian mangrove forest: Arup Ratan Roy, Sandeep Chakraborty, Apala Karmakar, Sergio de los Santos-Villalobos, Joydeep Mukherjee: Phycologia, 63(1), 89–106, 2024 https://doi.org/10.1080/00318884.2023.2294414
•   Enhanced production of antimicrobial compounds by three salt-tolerant actinobacterial strains isolated from the Sundarbans in a niche-mimic bioreactor: Sreyashi Sarkar, Malay Saha, Parasuraman Jaisankar. Satadal Das, Debashish Roy, Lalita Gauri Roy, Ratan Gachhui, Tuhinadri Sen and Joydeep Mukherjee: Marine Biotechnology, 10, 518-526, 2008
•   Enhanced protease production in a polymethylmethacrylate conico-cylindrical flask by two biofilm-forming bacteria: Sreyashi Sarkar, Debashis Roy and Joydeep Mukherjee: Bioresource Technology, 102, 1849-1855, 2011
•   Enhanced biotransformation of fluoranthene by intertidally-derived Cunnighamella elegans through biofilm-based and niche-mimic cultivations: Sayani Mitra, Arnab Pramanik, Srijoni Banerjee, Saubhik Haldar, Ratan Gachhui, Joydeep Mukherjee: Applied and Environmental Microbiology, 79, 7922-7930, 2013
•   Monitoring of biofilms grown on differentially structured metallic surfaces using confocal laser scanning microscopy: Daniel Kleine, Jonas Chodorski, Sayani Mitra, Christin Schlegel, Katharina Huttenlochner, Christine Müller-Renno, Joydeep Mukherjee, Christiane Ziegler, Roland Ulber: Engineering in Life Sciences, 19, 513–521, 2019
•   Polycyclic aromatic hydrocarbon sequestration by intertidal phototrophic biofilms cultivated in hydrophobic and hydrophilic biofilm-promoting culture vessels: Saranya Balu, Shantanu Bhunia, Ratan Gachhui, Joydeep Mukherjee: Journal of Hazardous Materials 437, 129318, 2022
•   Biosorption of cadmium and cobalt by intertidal multicomponent biofilms: Ahana Dutta, Abhishek Mandal, Joydeep Mukherjee, Reshmi Das: Marine Pollution Bulletin, 185, 114318, 2022
•   Utilization of vinasse for production of poly-3-(hydroxybutyrate-co hydroxyvalerate) by Haloferax mediterranei: Anirban Bhattacharyya, Arnab Pramanik, Sudipta Kumar Maji, Saubhik Haldar, Ujjal Kumar Mukhopadhyay, Joydeep Mukherjee: AMB Express, 2, 34, 2012
•   Production enhancement and characterization of the polyhydroxyalkanoate produced by Natrinema ajinwuensis (as synonym) ≡ Natrinema altunense strain RM-G10: Riddhi Mahansaria, Anusua Dhara, Amit Saha, Saubhik Haldar, Joydeep Mukherjee: International Journal of Biological Macromolecules, 107 (Pt. B), 1480-1490, 2018
•   Production enhancement of poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in Halogeometricum borinquense, characterization of the bioplastic and desalination of the bioreactor effluent: Riddhi Mahansaria, Sampa Bhowmik, Anusua Dhara, Amit Saha, Mrinal Kanti Mandal, Raja Ghosh, Joydeep Mukherjee: Process Biochemistry, 94, 243-257, 2020
•   Conversion of rural abattoir wastes to an organic fertilizer and its application in the field cultivation of tomato in India: Malancha Roy, Rimi Das, Anupam Debsarcar, Pradip Kumar Sen, Joydeep Mukherjee: Renewable Agriculture and Food Systems, 31 (4), 350-360, 2016
•   Development of a novel helical-ribbon mixer dryer for conversion of rural slaughterhouse wastes to an organic fertilizer and implications in the rural circular economy: Ankita Bhowmik, Shantanu Bhunia, Anupam Debsarkar, Rambilash Mallick, Malancha Roy, Joydeep Mukherjee: Sustainability 13, (16), 9455, 2021
•   Successive cultivation of cabbage and spinach by land application of recycled slaughterhouse waste: benefit to farmers and agro-ecosystem health: Shantanu Bhunia, Ankita Bhowmik, Arnab Pramanik, Rambilash Mallick, Joydeep Mukherjee: Environmental Technology and Innovation, 29, 102967, 2023
•   A tropical marine microbial natural products geobibliography as an example of desktop exploration of current research using web visualization tools: Joydeep Mukherjee, Lyndon E Llewellyn and Elizabeth A Evans-Illidge : Marine Drugs, 6, 550-577, 2008
•   Assessing the effect of herbicide diuron on river biofilm: A statistical model. Tanaya Bhowmick, Goutam Sen, Joydeep Mukherjee, Reshmi Das: Chemosphere, 282, 131104, 2021
•   Marine enzymes (Invited review article): Debashish Ghosh, Malay Saha, Barindra Sana and Joydeep Mukherjee: Advances in Biochemical Engineering and Biotechnology, 96, 189-218, 2005
•   Environmental microbiology and biotechnology: progress and prospects (invited review article): Joydeep Mukherjee: Chemie Ingenieur Technik 86, 12, 1-15, 2014
•   The current and future role of microbial culture collections in food security worldwide: Alondra María Díaz-Rodríguez, Lilian Alejandra Salcedo Gastelum, Carmen María Félix Pablos, Fannie Isela Parra-Cota, Gustavo Santoyo, Mariana Laura Puente, Dhruba Bhattacharya, Joydeep Mukherjee, Sergio de los Santos-Villalobos: Frontiers in Sustainable Food Systems 4:614739. doi: 10.3389/fsufs.2020.614739, 2021
•   Role of intertidal microbial communities in carbon dioxide sequestration and pollutant removal: A review: Abhishek Mandal, Ahana Dutta, Reshmi Das, Joydeep Mukherjee: Marine Pollution Bulletin 170, 112626, 2021